PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG327900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 188aa    MW: 21385.2 Da    PI: 6.7809
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG327900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.1e-273988251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         rie+ + rqv fskRr g++KKA+ELSvLCda+va+i+fs+ g+lye++s
  Pavir.6NG327900.1.p 39 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALIVFSPAGRLYEFAS 88
                         8***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.3053090IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-353089IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-283252IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-2932105IPR002100Transcription factor, MADS-box
CDDcd002651.98E-3532100No hitNo description
PfamPF003191.0E-263986IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-285267IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-286788IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEEREEATTA RRAELQLLQQ LDKEEIKGKR KRGRVELRRI EDRTSRQVRF SKRRSGLFKK  60
AYELSVLCDA QVALIVFSPA GRLYEFASSG SSIEEIFGRY WDLANTINDL NIEARDSTVD  120
CNTQNKEQQS SVSSLPNQLN IIAQWGMEAN AEEMSMTEIR NLEETVTDAL AAIRNKLRMK  180
VVGLPQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-173289360Myocyte-specific enhancer factor 2B
1tqe_Q2e-173289360Myocyte-specific enhancer factor 2B
1tqe_R2e-173289360Myocyte-specific enhancer factor 2B
1tqe_S2e-173289360Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.180538e-49leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429806e-77AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974004.16e-92PREDICTED: MADS-box transcription factor 56-like
RefseqXP_012702155.16e-92PREDICTED: MADS-box transcription factor 56-like
TrEMBLK3YJX19e-85K3YJX1_SETIT; Uncharacterized protein
STRINGSi014540m3e-84(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.11e-28AGAMOUS-like 14